2020-07-07 04:25:44,458 INFO [checklist] checklist: {'CHS currents file': {'forecast': {'filename': '/results/SalishSea/forecast.201905/06jul20/CHS_currents.nc', 'run date': '2020-07-06'}, 'forecast2': {'filename': '/results/SalishSea/forecast2.201905/06jul20/CHS_currents.nc', 'run date': '2020-07-06'}, 'nowcast': {'filename': '/results/SalishSea/nowcast-blue.201905/06jul20/CHS_currents.nc', 'run date': '2020-07-06'}}, 'ERDDAP flag files': {'SCVIP-CTD': ['ubcONCSCVIPCTD15mV1'], 'SEVIP-CTD': ['ubcONCSEVIPCTD15mV1'], 'TWDP-ferry': ['ubcONCTWDP1mV1'], 'VFPA-HADCP': ['ubcVFPA2ndNarrowsCurrent2sV1'], 'nemo-forecast': ['ubcSSfBoundaryBaySSH10m', 'ubcSSfCampbellRiverSSH10m', 'ubcSSfCherryPointSSH10m', 'ubcSSfFridayHarborSSH10m', 'ubcSSfHalfmoonBaySSH10m', 'ubcSSfNanaimoSSH10m', 'ubcSSfNeahBaySSH10m', 'ubcSSfNewWestminsterSSH10m', 'ubcSSfPatriciaBaySSH10m', 'ubcSSfPointAtkinsonSSH10m', 'ubcSSfPortRenfrewSSH10m', 'ubcSSfSandHeadsSSH10m', 'ubcSSfSandyCoveSSH10m', 'ubcSSfSquamishSSH10m', 'ubcSSfVictoriaSSH10m', 'ubcSSfWoodwardsLandingSSH10m', 'ubcSSfDepthAvgdCurrents1h', 'ubcSSf3DuGridFields1h', 'ubcSSf3DvGridFields1h', 'ubcSSfSurfaceTracerFields1h'], 'nowcast-green': ['ubcSSg3DBiologyFields1hV19-05', 'ubcSSg3DTracerFields1hV19-05', 'ubcSSg3DuGridFields1hV19-05', 'ubcSSg3DvGridFields1hV19-05', 'ubcSSg3DwGridFields1hV19-05', 'ubcSSgSurfaceTracerFields1hV19-05', 'ubcSSg3DAuxiliaryFields1hV19-05'], 'weather': ['ubcSSaSurfaceAtmosphereFieldsV1'], 'wwatch3-forecast': ['ubcSSf2DWaveFields30mV17-02']}, 'FVCOM atmospheric forcing': {'forecast': {'hfx': '/results/forcing/atmospheric/GEM2.5/vhfr-fvcom/atmos_x2_forecast_hfx_20200707.nc', 'model config': 'x2', 'precip': '/results/forcing/atmospheric/GEM2.5/vhfr-fvcom/atmos_x2_forecast_precip_20200707.nc', 'run date': '2020-07-06', 'wnd': '/results/forcing/atmospheric/GEM2.5/vhfr-fvcom/atmos_x2_forecast_wnd_20200707.nc'}, 'nowcast': {'hfx': '/results/forcing/atmospheric/GEM2.5/vhfr-fvcom/atmos_x2_nowcast_hfx_20200706.nc', 'model config': 'x2', 'precip': '/results/forcing/atmospheric/GEM2.5/vhfr-fvcom/atmos_x2_nowcast_precip_20200706.nc', 'run date': '2020-07-06', 'wnd': '/results/forcing/atmospheric/GEM2.5/vhfr-fvcom/atmos_x2_nowcast_wnd_20200706.nc'}}, 'FVCOM atmospheric forcing upload': {'arbutus.cloud-nowcast': {'forecast': {'files': ['atmos_x2_forecast_hfx_20200707.nc', 'atmos_x2_forecast_precip_20200707.nc', 'atmos_x2_forecast_wnd_20200707.nc'], 'model config': 'x2', 'run date': '2020-07-06'}}}, 'FVCOM boundary conditions': {'forecast': {'model config': 'x2', 'open boundary file': '/nemoShare/MEOPAR/nowcast-sys/fvcom-runs/input.x2/bdy_x2_forecast_brcl_20200707.nc', 'run date': '2020-07-06'}, 'nowcast': {'model config': 'x2', 'open boundary file': '/nemoShare/MEOPAR/nowcast-sys/fvcom-runs/input.x2/bdy_x2_nowcast_brcl_20200706.nc', 'run date': '2020-07-06'}}, 'FVCOM rivers forcing': {'forecast': {'model config': 'x2', 'rivers forcing file': '/nemoShare/MEOPAR/nowcast-sys/fvcom-runs/input.x2/rivers_x2_forecast_20200707.nc', 'run date': '2020-07-06'}, 'nowcast': {'model config': 'x2', 'rivers forcing file': '/nemoShare/MEOPAR/nowcast-sys/fvcom-runs/input.x2/rivers_x2_nowcast_20200706.nc', 'run date': '2020-07-06'}}, 'FVCOM run': {'r12 nowcast': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'model config': 'r12', 'run date': '2020-07-06'}, 'x2 forecast': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'model config': 'x2', 'run date': '2020-07-06'}, 'x2 nowcast': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'model config': 'x2', 'run date': '2020-07-06'}}, 'Fraser River turbidity': '/results/forcing/rivers/river_turb/riverTurbDaily2_y2020m07d06.nc', 'Live Ocean boundary conditions': {'temperature & salinity': '/'}, 'Live Ocean products': {'2020-07-06': '/results/forcing/LiveOcean/downloaded/20200706/low_passed_UBC.nc'}, 'NEMO run': {'forecast': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'run date': '2020-07-06'}, 'forecast2': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'run date': '2020-07-06'}, 'nowcast': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'run date': '2020-07-06'}, 'nowcast-agrif': {'completed': True, 'host': 'orcinus-nowcast-agrif', 'job id': '10848689', 'run date': '2020-07-06'}, 'nowcast-dev': {'completed': True, 'host': 'salish-nowcast', 'run date': '2020-07-06'}, 'nowcast-green': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'run date': '2020-07-06'}}, 'Neah Bay ssh': {'fcst': ['ssh_y2020m07d07.nc', 'ssh_y2020m07d08.nc', 'ssh_y2020m07d09.nc', 'ssh_y2020m07d10.nc'], 'obs': 'ssh_y2020m07d06.nc', 'txt': 'sshNB_2020-07-07_09.txt'}, 'ONC CTD data': {'SCVIP': '/results/observations/ONC/CTD/SCVIP/SCVIP_CTD_15m_20200706.nc', 'SEVIP': '/results/observations/ONC/CTD/SEVIP/SEVIP_CTD_15m_20200706.nc'}, 'VFPA HADCP data': {'UTC date': '2020-07-06', 'extended': '/opp/observations/AISDATA/netcdf/VFPA_2ND_NARROWS_HADCP_2s_202007.nc'}, 'VHFR FVCOM results files': {'forecast': {'files': ['/opp/fvcom/forecast-x2/06jul20/vh_x2_restart_0001.nc', '/opp/fvcom/forecast-x2/06jul20/vh_x2_station_timeseries.nc', '/opp/fvcom/forecast-x2/06jul20/vh_x2_0001.nc'], 'host': 'arbutus.cloud-nowcast', 'model config': 'x2', 'run date': '2020-07-06'}, 'nowcast': {'files': ['/opp/fvcom/nowcast-r12/06jul20/vh_r12_restart_0001.nc', '/opp/fvcom/nowcast-r12/06jul20/vh_r12_station_timeseries.nc', '/opp/fvcom/nowcast-r12/06jul20/vh_r12_0001.nc'], 'host': 'arbutus.cloud-nowcast', 'model config': 'r12', 'run date': '2020-07-06'}}, 'WW3 currents forcing': {'forecast': '/nemoShare/MEOPAR/nowcast-sys/wwatch3-runs/current/SoG_current_20200706.nc', 'forecast2': '/nemoShare/MEOPAR/nowcast-sys/wwatch3-runs/current/SoG_current_20200707.nc', 'run date': '2020-07-07'}, 'WW3 wind forcing': {'forecast': '/nemoShare/MEOPAR/nowcast-sys/wwatch3-runs/wind/SoG_wind_20200706.nc', 'forecast2': '/nemoShare/MEOPAR/nowcast-sys/wwatch3-runs/wind/SoG_wind_20200707.nc'}, 'WWATCH3 results files': {'forecast': ['/opp/wwatch3/forecast/06jul20/SoG_ww3_fields_20200707_20200708.nc', '/opp/wwatch3/forecast/06jul20/SoG_ww3_points_20200707_20200708.nc'], 'forecast2': ['/opp/wwatch3/forecast2/07jul20/SoG_ww3_fields_20200708_20200709.nc', '/opp/wwatch3/forecast2/07jul20/SoG_ww3_points_20200708_20200709.nc'], 'nowcast': ['/opp/wwatch3/nowcast/06jul20/SoG_ww3_fields_20200706_20200706.nc', '/opp/wwatch3/nowcast/06jul20/SoG_ww3_points_20200706_20200706.nc']}, 'WWATCH3 run': {'forecast': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'run date': '2020-07-06'}, 'forecast2': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'run date': '2020-07-07'}, 'nowcast': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'run date': '2020-07-06'}}, 'forcing links': {'arbutus.cloud-nowcast': {'links': 'forecast2 2020-07-07 ' 'ssh rivers weather ' 'LiveOcean ', 'run date': '2020-07-07'}, 'orcinus-nowcast-agrif': {'links': 'nowcast-agrif ' '2020-07-06 ssh rivers ' 'weather LiveOcean ', 'run date': '2020-07-06'}, 'salish-nowcast': {'links': 'nowcast+ 2020-07-06 ssh rivers ' 'weather LiveOcean ', 'run date': '2020-07-06'}}, 'forcing upload': {'arbutus.cloud-nowcast': {'forecast2': {'file types': ['ssh', 'rivers', 'weather', 'boundary ' 'conditions'], 'run date': '2020-07-07'}}, 'graham-hindcast': {'forecast2': {'file types': ['ssh', 'rivers', 'weather', 'boundary ' 'conditions'], 'run date': '2020-07-07'}}, 'optimum-hindcast': {'turbidity': {'file types': ['turbidity'], 'run date': '2020-07-06'}}, 'orcinus-nowcast-agrif': {'forecast2': {'file types': ['ssh', 'rivers', 'weather', 'boundary ' 'conditions'], 'run date': '2020-07-07'}}}, 'log rotation': {'log files': ['/SalishSeaCast/logs/nowcast/nowcast.log', '/SalishSeaCast/logs/nowcast/nowcast.debug.log', '/SalishSeaCast/logs/nowcast/checklist.log']}, 'plots': {'fvcom forecast-x2 publish': ['/results/nowcast-sys/figures/fvcom/forecast-x2/06jul20/CP_waterlevel_06jul20.svg', 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