2020-07-01 04:28:06,332 INFO [checklist] checklist: {'CHS currents file': {'forecast': {'filename': '/results/SalishSea/forecast.201905/30jun20/CHS_currents.nc', 'run date': '2020-06-30'}, 'forecast2': {'filename': '/results/SalishSea/forecast2.201905/30jun20/CHS_currents.nc', 'run date': '2020-06-30'}, 'nowcast': {'filename': '/results/SalishSea/nowcast-blue.201905/30jun20/CHS_currents.nc', 'run date': '2020-06-30'}}, 'ERDDAP flag files': {'SCVIP-CTD': ['ubcONCSCVIPCTD15mV1'], 'SEVIP-CTD': ['ubcONCSEVIPCTD15mV1'], 'TWDP-ferry': ['ubcONCTWDP1mV1'], 'VFPA-HADCP': ['ubcVFPA2ndNarrowsCurrent2sV1'], 'nemo-forecast': ['ubcSSfBoundaryBaySSH10m', 'ubcSSfCampbellRiverSSH10m', 'ubcSSfCherryPointSSH10m', 'ubcSSfFridayHarborSSH10m', 'ubcSSfHalfmoonBaySSH10m', 'ubcSSfNanaimoSSH10m', 'ubcSSfNeahBaySSH10m', 'ubcSSfNewWestminsterSSH10m', 'ubcSSfPatriciaBaySSH10m', 'ubcSSfPointAtkinsonSSH10m', 'ubcSSfPortRenfrewSSH10m', 'ubcSSfSandHeadsSSH10m', 'ubcSSfSandyCoveSSH10m', 'ubcSSfSquamishSSH10m', 'ubcSSfVictoriaSSH10m', 'ubcSSfWoodwardsLandingSSH10m', 'ubcSSfDepthAvgdCurrents1h', 'ubcSSf3DuGridFields1h', 'ubcSSf3DvGridFields1h', 'ubcSSfSurfaceTracerFields1h'], 'nowcast-green': ['ubcSSg3DBiologyFields1hV19-05', 'ubcSSg3DTracerFields1hV19-05', 'ubcSSg3DuGridFields1hV19-05', 'ubcSSg3DvGridFields1hV19-05', 'ubcSSg3DwGridFields1hV19-05', 'ubcSSgSurfaceTracerFields1hV19-05', 'ubcSSg3DAuxiliaryFields1hV19-05'], 'weather': ['ubcSSaSurfaceAtmosphereFieldsV1'], 'wwatch3-forecast': ['ubcSSf2DWaveFields30mV17-02']}, 'FVCOM atmospheric forcing': {'forecast': {'hfx': '/results/forcing/atmospheric/GEM2.5/vhfr-fvcom/atmos_x2_forecast_hfx_20200701.nc', 'model config': 'x2', 'precip': '/results/forcing/atmospheric/GEM2.5/vhfr-fvcom/atmos_x2_forecast_precip_20200701.nc', 'run date': '2020-06-30', 'wnd': '/results/forcing/atmospheric/GEM2.5/vhfr-fvcom/atmos_x2_forecast_wnd_20200701.nc'}, 'nowcast': {'hfx': '/results/forcing/atmospheric/GEM2.5/vhfr-fvcom/atmos_x2_nowcast_hfx_20200630.nc', 'model config': 'x2', 'precip': '/results/forcing/atmospheric/GEM2.5/vhfr-fvcom/atmos_x2_nowcast_precip_20200630.nc', 'run date': '2020-06-30', 'wnd': '/results/forcing/atmospheric/GEM2.5/vhfr-fvcom/atmos_x2_nowcast_wnd_20200630.nc'}}, 'FVCOM atmospheric forcing upload': {'arbutus.cloud-nowcast': {'forecast': {'files': ['atmos_x2_forecast_hfx_20200701.nc', 'atmos_x2_forecast_precip_20200701.nc', 'atmos_x2_forecast_wnd_20200701.nc'], 'model config': 'x2', 'run date': '2020-06-30'}}}, 'FVCOM boundary conditions': {'forecast': {'model config': 'x2', 'open boundary file': '/nemoShare/MEOPAR/nowcast-sys/fvcom-runs/input.x2/bdy_x2_forecast_brcl_20200701.nc', 'run date': '2020-06-30'}, 'nowcast': {'model config': 'x2', 'open boundary file': '/nemoShare/MEOPAR/nowcast-sys/fvcom-runs/input.x2/bdy_x2_nowcast_brcl_20200630.nc', 'run date': '2020-06-30'}}, 'FVCOM rivers forcing': {'forecast': {'model config': 'x2', 'rivers forcing file': '/nemoShare/MEOPAR/nowcast-sys/fvcom-runs/input.x2/rivers_x2_forecast_20200701.nc', 'run date': '2020-06-30'}, 'nowcast': {'model config': 'x2', 'rivers forcing file': '/nemoShare/MEOPAR/nowcast-sys/fvcom-runs/input.x2/rivers_x2_nowcast_20200630.nc', 'run date': '2020-06-30'}}, 'FVCOM run': {'r12 nowcast': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'model config': 'r12', 'run date': '2020-06-30'}, 'x2 forecast': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'model config': 'x2', 'run date': '2020-06-30'}, 'x2 nowcast': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'model config': 'x2', 'run date': '2020-06-30'}}, 'Fraser River turbidity': '/results/forcing/rivers/river_turb/riverTurbDaily2_y2020m06d30.nc', 'Live Ocean boundary conditions': {'temperature & salinity': '/'}, 'Live Ocean products': {'2020-06-30': '/results/forcing/LiveOcean/downloaded/20200630/low_passed_UBC.nc'}, 'NEMO run': {'forecast': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'run date': '2020-06-30'}, 'forecast2': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'run date': '2020-06-30'}, 'nowcast': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'run date': '2020-06-30'}, 'nowcast-agrif': {'completed': True, 'host': 'orcinus-nowcast-agrif', 'job id': '10846033', 'run date': '2020-06-30'}, 'nowcast-dev': {'host': 'salish-nowcast', 'run date': '2020-06-30', 'run dir': '/SalishSeaCast/runs/30jun20nowcast-dev_2020-06-30T112844.790753-0700', 'run exec cmd': 'qsub ' '/SalishSeaCast/runs/30jun20nowcast-dev_2020-06-30T112844.790753-0700/SalishSeaNEMO.sh', 'run id': '7280.master'}, 'nowcast-green': {'completed': True, 'host': 'arbutus.cloud-nowcast', 'run date': '2020-06-30'}}, 'Neah Bay ssh': {'fcst': ['ssh_y2020m07d01.nc', 'ssh_y2020m07d02.nc', 'ssh_y2020m07d03.nc', 'ssh_y2020m07d04.nc'], 'obs': 'ssh_y2020m06d30.nc', 'txt': 'sshNB_2020-07-01_10.txt'}, 'ONC CTD data': {'SCVIP': '/results/observations/ONC/CTD/SCVIP/SCVIP_CTD_15m_20200630.nc', 'SEVIP': '/results/observations/ONC/CTD/SEVIP/SEVIP_CTD_15m_20200630.nc'}, 'VFPA HADCP data': {'UTC date': '2020-06-30', 'extended': '/opp/observations/AISDATA/netcdf/VFPA_2ND_NARROWS_HADCP_2s_202006.nc'}, 'VHFR FVCOM results files': {'forecast': {'files': ['/opp/fvcom/forecast-x2/30jun20/vh_x2_restart_0001.nc', '/opp/fvcom/forecast-x2/30jun20/vh_x2_station_timeseries.nc', '/opp/fvcom/forecast-x2/30jun20/vh_x2_0001.nc'], 'host': 'arbutus.cloud-nowcast', 'model config': 'x2', 'run date': '2020-06-30'}, 'nowcast': {'files': ['/opp/fvcom/nowcast-r12/30jun20/vh_r12_restart_0001.nc', '/opp/fvcom/nowcast-r12/30jun20/vh_r12_station_timeseries.nc', '/opp/fvcom/nowcast-r12/30jun20/vh_r12_0001.nc'], 'host': 'arbutus.cloud-nowcast', 'model config': 'r12', 'run date': '2020-06-30'}}, 'WW3 currents forcing': {'forecast': '/nemoShare/MEOPAR/nowcast-sys/wwatch3-runs/current/SoG_current_20200630.nc', 'forecast2': '/nemoShare/MEOPAR/nowcast-sys/wwatch3-runs/current/SoG_current_20200701.nc', 'run date': 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